PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29644.m000187
Common NameRCOM_0551040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 105aa    MW: 12023.8 Da    PI: 9.6161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29644.m000187genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.4e-333491359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYegeHnh+
  29644.m000187 34 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERASDDPSMLVVTYEGEHNHT 91
                   99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-71130IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-342291IPR003657WRKY domain
PROSITE profilePS5081131.3992793IPR003657WRKY domain
SuperFamilySSF1182903.01E-283091IPR003657WRKY domain
SMARTSM007741.1E-383292IPR003657WRKY domain
PfamPF031061.1E-283490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MDLDFSIYYS RKLRLKRVVR IPAISLKLSD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS  60
VRGCPARKHV ERASDDPSML VVTYEGEHNH TLSVAETTNL ILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-242092273WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533267.23e-64PREDICTED: probable WRKY transcription factor 15 isoform X1
SwissprotO221762e-52WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLB9T4U84e-73B9T4U8_RICCO; Putative uncharacterized protein
STRINGPOPTR_0007s10670.16e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-53WRKY DNA-binding protein 15